Bundled with Jms Multisites Patch definition 1.2.41

• Modify the SH404SEF patch to be complient with version 2.0.
  Some patches where moved into other files after they have refactor their code to use MVC.
• Add JMS Tools (install) definitions for :
  - Multisites patches for Mighty,
  - Disqus Comment System for Joomla!,
  - Scribe,
  - SEF Title Prefix and Suffix,
  - some sh404SEF plugins,
  - Simply Links,
  - WysiwygPro3