Hi Edwin,
We may be wrong but our tests show that:
On Joomla 1.6 the Copy Template option is not working properly (we don't have this problem on Joomla 1.5).
On Joomla 1.6:
The templates are copied correctly in the slave but the JPATH_THEMES still points to the Master.(We configured properly the URL on JMS and Apache virtual host).
When we change the parameters of the template on the slave, indeed those parameters are changed to the Slave which is correct, but when we change the files of the slave template (in order to customize it more than just changing the preset parameters), the files update aren't showing on the Slave. The original version of the Master template files are taken and therefore the files changes aren't reflected on the slave.
In short:
in Joomla 1.6, the template files of the slave aren't taken into consideration, instead the files of the Master are used.
Sorry for the long mail and thanks for your support.
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